How To Create A Custom WordPress Theme or Convert HTML to WordPress
Background info:
http://www.wpexplorer.com/wordpress-tips-anatomy-wordpress-theme/
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the code to call the style.css of a theme would generally be:
<link rel="stylesheet" type="text/css" media="all" href="<?php bloginfo( 'stylesheet_url' ); ?>" />
(assuming that you followed the standard folder and file structure)
put this in your header.php
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the menu code should go at the bottom of header.php and include the CSS class names you want to apply to the menu
<?php wp_nav_menu( array(
‘sort_column’ => ‘menu_order’,
‘theme_location’ => ‘primary’,
‘container_class’ => ‘nav-main’,
‘menu_class’ => ‘fl-drop’,
‘link_before’ => ‘<span class=”my-menu-item”>’,
‘link_after’ => ‘</span>’
) ); ?>
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How to make your menus work
http://code.tutsplus.com/tutorials/creating-a-wordpress-theme-from-static-html-adding-navigation–wp-34032